NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074064_11757539

Scaffold Ga0074064_11757539


Overview

Basic Information
Taxon OID3300006603 Open in IMG/M
Scaffold IDGa0074064_11757539 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)699
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005436Metagenome / Metatranscriptome401Y

Sequences

Protein IDFamilyRBSSequence
Ga0074064_117575391F005436N/AAASKRQLTVEAVMPSRLDPPDMPRLDVLDEEFGGDADAVLHARRRRIGERLLMLAIVALGLGAIGALAFAWSNADGPLRFELQSAAAAPKSAQRAAAQEEIERLRGELDALKNDVKELTEAQHQAAHTIATMKAAEEDLRRDVPPPYWYSNLATLDFAIANQPQWGGVSLPPRRPATARSESRGLRKREGAAPASPASP*

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