NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0101566_10435246

Scaffold Ga0101566_10435246


Overview

Basic Information
Taxon OID3300006618 Open in IMG/M
Scaffold IDGa0101566_10435246 Open in IMG/M
Source Dataset NameSoil microbial communities from the Leymus chinensis steppe, China - without N addition
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChengdu Institute of Biology, Chinese Academy of Sciences
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)559
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition

Source Dataset Sampling Location
Location Namethe Inner Mongolia Grassland Ecosystem Research Station (IMGERS), China
CoordinatesLat. (o)43.63Long. (o)116.7Alt. (m)Depth (m).1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004940Metagenome / Metatranscriptome418Y
F030547Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0101566_104352461F030547N/AMGRSRGTSSQRYRFFMWIATALWLIGAIAAVIDRDTLNAVAWFGFAAAGVLTASGSTERSRGLAYLSIGLVVAAMAILIGVFLAD*
Ga0101566_104352462F004940AGGAGMGEGDHPAKEQALKRLSEPEGDHELHSVLERMRVHHPHLWEALHRVHFSHEAGPSRLEDWRKAPEGSQEEVWAEHYD

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.