NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101441_124812

Scaffold Ga0101441_124812


Overview

Basic Information
Taxon OID3300006621 Open in IMG/M
Scaffold IDGa0101441_124812 Open in IMG/M
Source Dataset NameMarine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ07 time point
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2603
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location NamePort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068147Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0101441_1248125F068147GAGGMIKGQKDWDYQFVSDCEVVNVFIPKNTHLAEYQTLKQKLLLLQQVECDNHLTSSIVNLYNTSSIDWIEHVRKMGHKYVAFWFDGCWPKTDGIEKKILTYINRLEKKDWITAVHPKYVDSLMLLNIDEFIAWPAKAPNFGNYDFWAENWLGESTVELSKTIERNIVVGAPKTDPVNFLNGLMGKKYTDHTIARGARVIIKRKNIPSSPVYFVNTEPSSPTVADAIKHTVFEQYVGVTAGFKLLYYAYTYGIDIDSTKFVWYDFDAYSVKFKRLMVEEWDGFDYPAFVKQWCKDNPDANALLLKQVDKDWLNIVEQFGGMDNWLDFWMQVKLCKHEFLEVDLVSNHKEITDRLDNNSSTFFWASNIYS
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