Scaffold Ga0101568_10303429

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101568_10303429

Scaffold Ga0101568_10303429

Overview

Basic Information
Taxon OID	3300006623 Open in IMG/M
Scaffold ID	Ga0101568_10303429 Open in IMG/M
Source Dataset Name	Soil microbial communities from the Leymus chinensis steppe, China - after adding 5.25 g N m- 2, yr-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chengdu Institute of Biology, Chinese Academy of Sciences
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	514
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera → unclassified Thauera → Thauera sp. 28	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition

Source Dataset Sampling Location
Location Name	the Inner Mongolia Grassland Ecosystem Research Station
Coordinates	Lat. (^o)	43.63	Long. (^o)	116.7	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018165	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101568_103034291	F018165	AGGAG	VREDQSLAQMANEVLMRQAKVRADRSGEPIEEAMEAVVNTEAGKQLRELRDGPHSEESVEQAQVGVARDRAKERVEDLGKRLGEAPEFPTHG*

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