NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075461_10008271

Scaffold Ga0075461_10008271


Overview

Basic Information
Taxon OID3300006637 Open in IMG/M
Scaffold IDGa0075461_10008271 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3447
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F000645Metagenome / Metatranscriptome962Y
F002241Metagenome / Metatranscriptome579Y
F004115Metagenome / Metatranscriptome452Y
F009683Metagenome / Metatranscriptome314Y
F014613Metagenome / Metatranscriptome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0075461_1000827110F000545N/AMDAYRFGWALGLSKMIKDAHPFPCSNCKLVTPHIEMKRFSTEDVAEAPEEVWLVECQRCFLQRIIYPSDRVTSKEDDILRCEQCGGWKMKSGKCRVCRLAAGFEKLSVKYWTGNSTMERPYDEQAPLY*
Ga0075461_1000827111F002241AGGMSKPHSIRYIKQLMEWGFDKEFIARDAGINVESLMTRLRRAEERERNGNKGTESGTSSSQPNS*
Ga0075461_100082716F014613GAGMFPNLSDTQVVGFSILIPFIGLYLWALWTSAKAKAFNEGYKRGRASVRYTEIIK*
Ga0075461_100082717F009683GGAGVSDTQKSLNEWLESAGDTLFDRGIEYGDPRHNLLRIFKISKALGIQLRDPSDLAIIAIATKLSRMVESPEREDSYLDLIGYAAILGRLRFSTPEDWDDIEFDSQS*
Ga0075461_100082718F004115GGALTRNHNSNQYCDYCKYRWGQNKNGWDLRATTPAVWKVQSETPLRKAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR*
Ga0075461_100082719F000645GAGMSSYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADLHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKVNQGPKKPIETTKPALAEFIKEQRPNDPDPIVWDVSAVANALGAEIIDELPLCSNGCGPMILKQGTKEGKEYRGWVCPVPKSGHPAKWMRIGSDGHWVFQK*
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