Scaffold Ga0075522_10261468

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0075522_10261468

Scaffold Ga0075522_10261468

Overview

Basic Information
Taxon OID	3300006638 Open in IMG/M
Scaffold ID	Ga0075522_10261468 Open in IMG/M
Source Dataset Name	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	851
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	USA: Barrow Environmental Observatory site, Alaska
Coordinates	Lat. (^o)	71.299	Long. (^o)	-156.61	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075522_102614681	F005296	N/A	LLPSYEAGFYSAVIAGKIRNRGKVRELLVHGKRPRTTLPLIDERLRKAAGTPTRAQAFAVRHLVALVRWLANSRAIEYAILIGLKRSWPMGQAIHPKVRFCL*
Ga0075522_102614682	F009261	AGGAG	MIITPSNSGNLVAGAGIGIFAWGAFLKADKIPFLKKLLTTKRKETTLTWINGNKGISLLGLEAINFGIHGILSPNAVIFALGNTILNIFMLWVYLPFRMGCAGKQHIKTVLKGVTV*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.