Scaffold Ga0079301

Basic Information
Taxon OID	3300006639 Open in IMG/M
Scaffold ID	Ga0079301_1000085 Open in IMG/M
Source Dataset Name	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006639 Open in IMG/M

Scaffold ID

Ga0079301_1000085 Open in IMG/M

Source Dataset Name

Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46261
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (81.82%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

46261

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (81.82%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	40.178	Long. (^o)	-81.073	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio

Coordinates

Lat. (^o)

40.178

Long. (^o)

-81.073

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001464	Metagenome / Metatranscriptome	689	Y
F002622	Metagenome / Metatranscriptome	542	Y
F005000	Metagenome / Metatranscriptome	415	Y
F005053	Metagenome / Metatranscriptome	413	Y
F005054	Metagenome / Metatranscriptome	413	Y
F008245	Metagenome / Metatranscriptome	336	N
F071173	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_100008519	F008245	GAGG	MAEDKNTLELISQITEFNDLHEFMKDEHLDKALAIVVKLLLNPDVPSAKSPMLIMELQAMSTKFAVMASYYSTIAKDKAGTTNNNKKNVYYSLKESIDKLVDALKYVVRYN*
Ga0079301_100008527	F005000	N/A	MRILLQMTHRRIKRFQIDVEFHDNAQLISLRPQYENLLIQDMRGKGYVRVLDIDPAFSVDFTGETWKFLMSIHGVYVGKKKAWQSEGITQGKSIPRTTRQTISKPS*
Ga0079301_100008531	F001464	GAG	MAGENRQRLRKKFVYFFLNGKVHKVLRLSRAKDEVVAWSYLDKKRMLYSYSQVDKHMEKAYTVAEASKILGRHKVTIEEYILQGKVKQPQRVYPISNPESTWSKYMLNEANILDIHEFILDAGHIRDLPSRSELQALLKHNLIMYTKTEDGKFVPVWKAE*
Ga0079301_100008541	F071173	GGAG	MITKFGKRFLTSYLSGNNDFASRELALGIGSSTPNVKGNDTKLDFEFYRLPVELSGFNILQSGVDVDGDPVYSYFVTYKSTIPQDVSGVVSEVGLYPGDRQSFNNFDSKFITSFTNEFNWFNGSDNPTSQGNTQDASGNYTFLSKVSDSMIKVDVSSGQTKEYINSLISDDISGYSINDTISIAYKKADNNLSKIRVKFYSSDLAYYYVDFTPLSGTGDRIQTLTLNNLFSNYTAAPNLPDPSSIIKIGVATTASGGNTTVYFDAIRINDEDTFDPGYGLISRSVLSTPLIKKAGRPVDIEYKLQLDF*
Ga0079301_100008544	F005053	GGAGG	MPMILPRGSVLSIEAKDLLATPEGTTKIWNKITEHNRSDIGISIERIEKAVRTSNGTLRKNHVADKRRFSLSWTMLPSYRTLTVDGAWGAEDLRSFYLSDDGKKEFNIRLNLAKGGADTSSSGALYTPNMAKTSSELYTVVFGGCNFSVVKRGLQPHWNISIELEEV*
Ga0079301_100008549	F000258	GGAGG	VTANYKLDAMLELRKYLWEELSSRDIFDADDYWSDNLNENIVPIIPVQQAPELNQFMSGKKHIVYDKIGMSYDDNWLICCEQILFTVYSTAVAEINEIRNYMTDEFRRMDESARDINRWAGLSDKFKFHSVHIADISPTAPSEELQGFFSSEIILEIKYSRDTDTNGASSTLGRFL*
Ga0079301_10000855	F002622	AGGAG	VSEEEDQYDADRLAYYMEIGAVTLEGMDENGELIYAISEDAETLAPELWQSHTEYVNRSLMELYEDGLVEIEYDENLEATIHLSPEGRKIAREKGLIDMDIDWDIPND*
Ga0079301_100008552	F005054	N/A	MAEILINSQSPIVHQIFWNGDIAVADALPIVKIYDVTLDARVSPAVLPTTVLATITSTLDENNPGTYVVNVPYALTNRNKTLKVNWEYSVGGVAVVRSDEVQVVTPYIDFNYIQDLGYSTDSSDPSYKSYKELIRAERYARKQIEEYTGQKFYLYDETLTVYGYEYDTLPLPAKIYQLHTLSVNDILLRDNINNIDNWNFPVQISESGYSIRINRAGMVDNTVYTANGMVPPSIHDYSGVFHSGVPYKVFARFGWEKVPENVELATAELMKDYFSKDTIWRNKYVKSISTFDWDFEYTGDAYTGTGNALADNLLADYVLTIKAEII*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079301_1000085

Overview

Ecosystem & Geography

Associated Families

Sequences