NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079301_1000272

Scaffold Ga0079301_1000272


Overview

Basic Information
Taxon OID3300006639 Open in IMG/M
Scaffold IDGa0079301_1000272 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24816
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001464Metagenome / Metatranscriptome689Y
F002501Metagenome / Metatranscriptome553Y
F003408Metagenome / Metatranscriptome488Y

Sequences

Protein IDFamilyRBSSequence
Ga0079301_100027218F003408AGAAGMPEIIQTFKSMHKTEDEKRKFLASLQGVNLNESSAEEGNSFEDIKRKALGIEASADDVVSLQGSYAAEAGFGIGAGLGYSRV*
Ga0079301_100027221F000258GGAGGMTPDYKLDAILEIRKFLWSKLVAAEIFDENDYFSDSINNNIVPIVPVQQVSEMDQFLSGKKHIVYDKIGTSYEENWMVCCEQILFTIYSPDVSEINEIRNFMIDEFRRVDESARDVNRFASLSNKFKFFSIFVADISPTEPSEEMQGLMSSDVILEVKYARMVDGVGRFL*
Ga0079301_10002723F001464GAGMARKNGSKTRKKFLYFFLNNKLHKVIRLSRPKDEIVAWCYAEKKRMMYSYSEVLKKMENAYTVKDVGLILGRHKVTIEEYILQGKIKKPQKVYPISNPDSLWYKFMFSESDILDLHSYILEAGYVKNIPSRSELRALLKNNIILYTKTESGFVPVWKAD*
Ga0079301_10002724F002501N/AMKCQKCRGRVFVDRVFSQKLHVELFCMQCGKRWMISKETSAFGKWLEKMDQKHAKNFSISS*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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