NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079301_1001649

Scaffold Ga0079301_1001649


Overview

Basic Information
Taxon OID3300006639 Open in IMG/M
Scaffold IDGa0079301_1001649 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10183
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (85.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F000808Metagenome / Metatranscriptome882Y
F001507Metagenome / Metatranscriptome681Y
F014250Metagenome / Metatranscriptome264Y
F034573Metagenome174Y
F040623Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0079301_100164911F040623AGAAGGMKVRISLEQTVDIDEAISNDVEFELFASPDMSDEDKVVYLINRFAEDIDSLVKYNEVMDNIQVEYLE*
Ga0079301_100164915F001507N/AMTTTHKPYTISELVNEIYEDNYSHFEFEENMGGDPCDCHLHITMNTIVKYWEN*
Ga0079301_100164920F000684AGGAMTLGGYTYQIGDLFTTSKTGITGRISNFTPINSKLTRVSLQLANGAHRFAMVKTSK*
Ga0079301_100164930F000808AGGAMEYNYSLTVSYDGELHFTLRTADLMEAVDAWTKCVDFGNAKEYATYNLSDPTGKMYTKTFYRNGEVTVK*
Ga0079301_10016494F034573AGGAGMYRINKSVQTSKEEKTAIAMGKLLSDFHLDLEKVGYYLAKSTPYLIFRRSLEVLESAQFQEDVIEHDRIGYNHDRLF*
Ga0079301_10016498F014250GAGGMNNLALAPRLQNLVDLGESGTDILHGELKNLMLEAETELLYWQKVEEDTDYQDAMDSMERKYAEGLLDAYANVYELTYQLAFAIADRNKANG*
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