NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079301_1004363

Scaffold Ga0079301_1004363


Overview

Basic Information
Taxon OID3300006639 Open in IMG/M
Scaffold IDGa0079301_1004363 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5893
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000450Metagenome / Metatranscriptome1126Y
F000868Metagenome / Metatranscriptome853Y
F001019Metagenome / Metatranscriptome804Y
F003422Metagenome / Metatranscriptome487Y

Sequences

Protein IDFamilyRBSSequence
Ga0079301_10043631F001019GGAGGMTHYEPSLEILEVNYSCSPGGIDMFEIYDRLDDDTMSIPIYETESLTEAVQYCYNLGKDFIVRTYAEWEMRELLANI*
Ga0079301_100436313F003422AGGMTQTWSKYDYLCTHCDALIEATVLDSFQPVSNITCTCGGSTALLSVSDATIQPTNERNTMETTDTYGATVTPAVPDTYNPNLLVTYKVIKGYSDPEYATDKVASIEWDLHNARQTQKSNAILHDKIDSVKNIITESFADSDDQETLRDIAEALGIELTKTVEWTATIEVSGTIELDILQEYDVESELYDNLYVDSQNGQIEIVDTEVTSAREC*
Ga0079301_10043634F000263AGGMEIKHSELPSHLQRMVDADINGLDIMHGELKNLMLIAEQNLTEAQAIEDETEEAMDSMERTRCEGALDTLVSLYALTYDLSFAIGLRTENRKDGHL*
Ga0079301_10043637F000868GAGGMSDPHGTIRNYRKGGSMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQMYADWCFADMAESNYLKGRFNQFYDLKPGDQYYIEWNEEA*
Ga0079301_10043639F000450GGCGGMGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAVFKARPRWSDPSYATRITISQMINNDWGSETGWGLYVNEIGDNEHKIAIIDFNQQTFSLHEEAPRNDKDNKVSGMSNQAIFTMDLSNFVEKYADVTLSV*
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