NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075527_10115673

Scaffold Ga0075527_10115673


Overview

Basic Information
Taxon OID3300006640 Open in IMG/M
Scaffold IDGa0075527_10115673 Open in IMG/M
Source Dataset NameArctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)747
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameUSA: Barrow Environmental Observatory site, Alaska
CoordinatesLat. (o)71.299Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005327Metagenome / Metatranscriptome404Y

Sequences

Protein IDFamilyRBSSequence
Ga0075527_101156732F005327N/AMILGISTTKSAVVIAETKGAGDKFVITVIKPIPFQVRTGDDLVELLQSLITLFDRKGRGAGSVIALLKCSSGRFGSCLEAIKGEAMIELAASQRGLRVVKVAPQSLKKTLGCATDQKWRDRAGELFNPDGKQRNWSKGAAGAVAVAFKVAGE*
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