NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101728_107271

Scaffold Ga0101728_107271


Overview

Basic Information
Taxon OID3300006654 Open in IMG/M
Scaffold IDGa0101728_107271 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0125100, Gp0113270, Gp0125099
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Marine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5077
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location
Location NameNorth Pond, Atlantic Ocean
CoordinatesLat. (o)22.78Long. (o)-46.09Alt. (m)Depth (m)4350
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000161Metagenome / Metatranscriptome1845Y
F002232Metagenome / Metatranscriptome580Y
F055782Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0101728_1072711F055782N/ARYKNISMKRGPKCCFTFDEFLAAWEKHKSIYGMKSAWGPGIDHLEQHLPITMIHKGEGQVGKMGCLKGAKRTGSNLSADRLDSSKPYTIQNLIFIRGDENSRKKNTTYEDCKIQIKLHEERFINMEAI*
Ga0101728_10727113F000161GAGMKKFTIEVSHASSPQLSTIALELKIMANGWEKHGPRIMINGQQVKAPSLTIPGSGDKRQATSSKPQNEHN*
Ga0101728_1072717F002232N/AMAVKTVKKLRKLKDELDKLHEKEDDLLFKIDEVIDELEDPDEE*
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