NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0031689_1184697

Scaffold Ga0031689_1184697


Overview

Basic Information
Taxon OID3300006694 Open in IMG/M
Scaffold IDGa0031689_1184697 Open in IMG/M
Source Dataset NameMetatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1239 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)701
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest of Perth, Australia, South Indian Ocean
CoordinatesLat. (o)-31.13Long. (o)110.21Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001583Metagenome / Metatranscriptome668Y

Sequences

Protein IDFamilyRBSSequence
Ga0031689_11846971F001583N/AAESDG*LLGGYAFF*FHYIIALGISLSATHLSDLTLTIIANIF*SVLNFTYKTYYIIFTNKHLNTDQLTRLMVLHYFTP*YYLYLVQLHVMFCHES*DSDSGENVYEDKSGSYVS*FYDAFLKEIQDA*Y*VLYVFCYFTIHHFAPGTVNYFFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MGL*FVLLAALPIIYSFYNTHHNYLPIIPMQHSYLQTC
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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