Scaffold Ga0098073

Basic Information
Taxon OID	3300006734 Open in IMG/M
Scaffold ID	Ga0098073_1000864 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006734 Open in IMG/M

Scaffold ID

Ga0098073_1000864 Open in IMG/M

Source Dataset Name

Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9357
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (20.83%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9357

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (20.83%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gulf of Mexico

Coordinates

Lat. (^o)

28.867

Long. (^o)

-90.467

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F003687	Metagenome / Metatranscriptome	473	Y
F015587	Metagenome	253	Y
F019817	Metagenome	227	Y
F103180	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100086413	F019817	N/A	MLTAKPPVGLRITQRNLYQYFLAHKKKYKNTPCYVPRLPMQNSRLDQYLQALVRLEEYGLISVDRSSDNYTGWIITDP*
Ga0098073_100086416	F001165	N/A	MTTPNTPRIPDSLDMERLQAMQLVAKMKESAEKHGIGFIGGFISPNGEKFVMTNMTDEDDINKLMPKDLK*
Ga0098073_100086418	F001120	N/A	MTKDKSPINFDKTIAGFNITENGIKSYTKSIKLGPFQLTLNARESGVRGSISIPGTGLSKRGIRIL*
Ga0098073_100086421	F001807	GGAGG	MTVLAIEDAFFTDNHVTVTAVVDEMRLLYRATRFEPEEWAPALCITTIQLDPEEPIPLDEDGFCSYLDHLDPDWQILDTSDEQ*
Ga0098073_100086422	F103180	N/A	MIGFSIEFKRWYFVLRGPKGRVYLATGFAKRMPVMTPTGTYTLEDCVGTWPGDEADQELLDTLKTTR*
Ga0098073_10008645	F015587	N/A	MTKLNIRKNIASALISAATAVDNAKVPTKASIGAGLHDIRCRAAALVMPNDMAFVLTPKNKI*
Ga0098073_10008646	F003687	N/A	MNYQAVEHLLTQDARLLARRDSPVIDQEIESARQAALDLYFQWQDGMKEFKDLMPFVAILQRKVDLNRDLLRWERKHEDQI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098073_1000864

Overview

Ecosystem & Geography

Associated Families

Sequences