NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098073_1002985

Scaffold Ga0098073_1002985


Overview

Basic Information
Taxon OID3300006734 Open in IMG/M
Scaffold IDGa0098073_1002985 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3972
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016593Metagenome / Metatranscriptome246Y
F052949Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0098073_10029851F016593AGTAGMKRLKTGVVNTLSFVKLSTFTVNSFDITLEKTVGTGSLTITNLTDLNNLDSCKDFISINVDLLSNDIDGGEYILTLSNSGSDYDYLTEVQDYTTTQSGSGIYSDTVRFTDL*
Ga0098073_10029852F052949N/AMKGNIYISVPAADKDNALPAAITRYDWNEYTYTEEGEVDTTTLVHPTWAQFGERNNGLFGSPVSVGDVVVYEMEASWLDSEVSALIALGEGQSAPNYTLYTNAEVRAFIAENTPSEL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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