NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098073_1009116

Scaffold Ga0098073_1009116


Overview

Basic Information
Taxon OID3300006734 Open in IMG/M
Scaffold IDGa0098073_1009116 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1752
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001215Metagenome746Y
F034542Metagenome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0098073_10091161F034542GGAMGRRKGSDNFGFRSFNAGPQINKVRDVIGADHPSHLSRPLSFDRRFRPATGTKDFSVLSDYDYASLWSRWRRGYELSMYSQEAYGGLTYSFKYYVSNTPGVGIFLPGIAFMYPTTRSDMRMWMVGIRPRDSFNFLDFGYSVESVSDYDDTTYAVKLSSNFGAPISFFTGEVLSNRYTSSGAEKQFGYSNYTVTAVGFNGTPLAPSYAPIFNTLFLSHAPNQSWTVVDSNTLAVPASGPPAVGEFLTTEMRSQCTCPDFLGREGFNLYSHSLKRRYPYTGVLNTVPGQYDAGPDQAQRIVPANDNPGYARSFGFIYLNEIYNIPSYTSSVYSDPNLLYFQPRWCKHIYAAMWDLQRRFNQNNTTSPWLPQPNDEPMNEWYREKFDKDLAKQVSFLKRERDLRWWQRYSPAKDDMPTHMMYPDM
Ga0098073_10091162F001215N/ADPTNPSLSDLIQLVRVGDLPSEDGALVEDITIISNEDYPDNSGVRTADVGIYVYMPNQAAPSTSAALMVGRFEVGLSGSTFGYPLGIQLPAVMAPVPRTGDTNLIAPIQLGKNEGLYLEKGYILCAGYIGVGPAGASGVAASGGLSPSGITILAQGGFY*
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