Scaffold Ga0098073_1045167

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098073_1045167

Scaffold Ga0098073_1045167

Overview

Basic Information
Taxon OID	3300006734 Open in IMG/M
Scaffold ID	Ga0098073_1045167 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	595
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020172	Metagenome / Metatranscriptome	225	N
F064767	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_10451671	F020172	N/A	MCTTVKRAMFCTRNGYKHIENLDKVCELIGRLKGLTESEYLDLCAISKLENARALEMAKHYPSH*
Ga0098073_10451673	F064767	AGG	VSDVDEYIIAVRAADSMAKTWKSDVAILSNLKVVRLDEAEGPILEVV

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