NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098073_1045346

Scaffold Ga0098073_1045346


Overview

Basic Information
Taxon OID3300006734 Open in IMG/M
Scaffold IDGa0098073_1045346 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)594
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038646Metagenome165Y
F093735Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0098073_10453461F093735N/ALLHTKSGAQAPLSHWRTYKPSEVFTQHHAWDLFFNMMGAGYTPFPGTSLPQLKNAFKK*
Ga0098073_10453462F038646N/AMTDDILDYARQLVANQPMKTPEHHSYHLDIPNDLHWELVRLGAELKMDYEVYAEEVLKAHAEDAISRRIVAKAYNDPSWVKKLKLDCIDEPDGTMTIHIEWDETDPDLLYWTSLGAKGQENFILTALRSACESVLSDHD

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