NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098038_1001478

Scaffold Ga0098038_1001478


Overview

Basic Information
Taxon OID3300006735 Open in IMG/M
Scaffold IDGa0098038_1001478 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10164
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000999Metagenome809Y
F005105Metagenome / Metatranscriptome412Y
F012166Metagenome283Y
F056146Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0098038_100147824F056146AGGMYNTLLYIGLTLMAVGFVGWVVSICMERHYEVKLWELEQKRKAENE*
Ga0098038_100147825F000999AGGMNRDTIQAGKIFQSTDFAVSWYAKKYNKVIFRIGNMSKDGCRVWESNGKKYMCFWDTVLERYTTCIDPMITYKRKVS*
Ga0098038_10014788F012166GAGMAELANSGIFLERKLTPEQKLWKAVLSQGVYEACSKKAQALPLTFGEMRSALEWVDLSNGDFIQVCIYAGYDPAYIFRKAKGKVNAKNM*
Ga0098038_10014789F005105AGGMRKICNACLGNGYRRIYKDTSEEEKIVIQCAACESSGEIEDEDFSYDYSGLDLNKLQ*
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