Scaffold Ga0098038_1058941

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098038_1058941

Scaffold Ga0098038_1058941

Overview

Basic Information
Taxon OID	3300006735 Open in IMG/M
Scaffold ID	Ga0098038_1058941 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1375
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED104	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015795	Metagenome	252	Y
F039705	Metagenome	163	N
F050680	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10589411	F039705	N/A	MQNMGYRKNKLEYEPIISSEEEAPIEYCNLDEKLNRRQRNFIWIAVNNPRLSLVECAHKAGYTSPRQMANKLMNKPIIRKEYNYLMNQAKKKYELNYDRA
Ga0098038_10589412	F050680	N/A	MPKIVQIKDKMGKPTLQEVISRLDAMFDNMVYRGEERLNIVLASLSFCIAQISTEFEDKEVAKLVDELLAQYIDKSAKK*
Ga0098038_10589414	F015795	AGGAG	MSKSNDLYSMMRLSYEQATDDYNNKKTDSIVNAYSKYYRQNVGMNCYDPQGDIINFYDEDNRQECAL*

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