NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098033_1003833

Scaffold Ga0098033_1003833


Overview

Basic Information
Taxon OID3300006736 Open in IMG/M
Scaffold IDGa0098033_1003833 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5379
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)275
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013357Metagenome272Y
F019113Metagenome231Y
F042854Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0098033_100383310F013357GGAGMARARYIPGALVEARNSKYGKGFGIIIQGPIMDTAQASAYCDLEKPQAWFKVHWFEKPGNVNSYYFRRHNGKVDMTKNQIKLVRKR*
Ga0098033_100383311F042854GGAGLKKFDRELERYTRNRMRELRGDLQPQWAQDPFIGVYTSRRIREMHLEHQTAQRKIDLDNRKLGSYTVSTMGDHNGES*
Ga0098033_100383312F019113N/AVSETFEVGDLVRDTLNNGRGNYGLGVVVATDSGGLLEEEVRVLGNEQDYADQDIPGKRYDVYFNKFERTITFHGDYLEKV*
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