Scaffold Ga0098037_1300639

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098037_1300639

Scaffold Ga0098037_1300639

Overview

Basic Information
Taxon OID	3300006737 Open in IMG/M
Scaffold ID	Ga0098037_1300639 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	506
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-1	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)		Depth (m)	90
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020821	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098037_13006391	F020821	AGGAGG	MAKSISISKTTQEGTSSNILVKEGRALYSIWKQTNSLKDSTNPKGFDTRLGKLLQQLKAMSPLDSGQISRQTLHQHNVDKIDRRRRSEALWFVENEVECREFIKNSKKGFTSLTALQAAMRKASKEAEAEPTEVEAAEDKPSKEEVS

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