NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098035_1002316

Scaffold Ga0098035_1002316


Overview

Basic Information
Taxon OID3300006738 Open in IMG/M
Scaffold IDGa0098035_1002316 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8889
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)135
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008105Metagenome / Metatranscriptome339Y
F014794Metagenome / Metatranscriptome260Y
F018815Metagenome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0098035_10023165F018815N/AMNNCLENVIEHLKPFLLKDIIIRTDKKILKRGRLKIFQIKQYYINLSLEYKNSIKNYEIPYPFDIHLEQDETEAVLNYHLSSFVPISQLNKVKCLDTSSKTKIYNNLVYIWPSEETTV*
Ga0098035_10023167F014794N/AMAMASIDNLAPTRSLIDLSKPDKGDFGIDDYELSFIFDDILLIEYADETKEGEIERNGVLIPTNALNKAWRKGKVILAGPDAKYAKEGDIVIFPNNMGVTINGVGITGKGKVKTGVFLNEERMFGICKKKDDSPKSDS*
Ga0098035_10023169F008105N/AMNFFQVQNKLFYSKKDDAGYLDTEGEQSFVPFLFNRWLSFYDNNMSVFVNETFNRFGNIFDNKQESYKLYYHLIPRLKWKKISYIKKKKKEEQEIDLTAIAKNRNMSVRELKMYVENYE*
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