NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098048_1000340

Scaffold Ga0098048_1000340


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1000340 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23530
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (22.03%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041866Metagenome / Metatranscriptome159Y
F057295Metagenome / Metatranscriptome136Y
F068721Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0098048_100034021F057295AGAAGMVKLINLNNEYYQLVREISEEQVNGNMEGLKAWRDMNHCDHVLKYQGKYLLVRLVKDAEIIN*
Ga0098048_100034058F068721N/AMINSGREMKRYWNKFLNWLIPSRREKLLVKIMKQDQELGLYDKTSNTKER*
Ga0098048_10003407F041866N/AMILYQVHHMWYETAMIQECWDSVLAALRASPNTDVKIQICLNKQTYVEKPNEGMKVDDFFTKHLDHSLFKDPRTTVTVKTDDQPFYNIADWRREVYDPEAKYTVWGETDTILPRDIFAILDKVEIEQEHVLTFAGRPMWDNSWDVVTHERLRGYSKPCQCTPDHKEDCIELLEEPYKYKDYINQTQLDKFNDESGDIILEQVPWKIDGSTVCISKGFETPFIAPGMHFVREDTCFEYYIRKKKIPQVCVTTRLKGHNYKHPSKRTGTFATRNDDVFKRYATDSMHAMNSFIYNLKV*
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