Basic Information | |
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Taxon OID | 3300006752 Open in IMG/M |
Scaffold ID | Ga0098048_1000539 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17854 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (88.24%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.509 | Long. (o) | -76.198 | Alt. (m) | Depth (m) | 48 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F011269 | Metagenome | 293 | Y |
F011396 | Metagenome / Metatranscriptome | 291 | Y |
F028790 | Metagenome / Metatranscriptome | 190 | N |
F082616 | Metagenome | 113 | N |
Protein ID | Family | RBS | Sequence |
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Ga0098048_100053915 | F028790 | GGA | MWILVWLSFIDNRFEYYQLGTFGTEAHCNKAKAKAEVMVKNVGQAVTCFAIDRN* |
Ga0098048_100053921 | F011396 | GGAG | MNDIPDYFAIAAKIIERAERGLPQDRWMRGDHEMEALVRAYIALLRTCETMHADMIQRGSDAMDIS* |
Ga0098048_100053923 | F011269 | GGAG | MEFFTAFYIEYAVRGMDIQSYILLPSYEACQVMIRDNEDMAEYMFADGDVNMWCIKTDKLSKSIAPVLRPE* |
Ga0098048_100053928 | F082616 | AGGAG | LIGYIACPECNGTGYIERERVAPWIDRDTPPDLVAYDEVCELCQGDGEIETNKHEEDDD* |
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