NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098048_1003933

Scaffold Ga0098048_1003933


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1003933 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5952
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018178Metagenome / Metatranscriptome236Y
F070064Metagenome / Metatranscriptome123Y
F082548Metagenome113Y
F088835Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0098048_100393311F018178GGAGMDRLDQILTRLSERINEWEGASREAIEAETNFKSFEAATQKAFMDGGASAAKAQTETRSTGEWANHYRAVQQASLMAEKLKKQIMLGQLMFDAERTKQANQRRIV*
Ga0098048_100393315F070064GGAGGMGRVKSDMFEEYLGPDDELVAKPISQVVDNIRDCDLPTNSVERYEFMQTQLKDLMNGIKTNS*
Ga0098048_10039337F088835N/AMMKEIQPWEYIVANQLNFLSGNVVQLLTEYARTKDIQLLEEACRDLGALTARERYLEQGFDADNSN*
Ga0098048_10039339F082548GGTGGMRSPRAVAQDMVKAMDAAMKQVWDAENKKESDEGLKRQVFAHVCNNYARRGGLHGSSEAASRRSNIRE*
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