NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0098048_1004706

Scaffold Ga0098048_1004706


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1004706 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5327
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033251Metagenome178N
F064114Metagenome129N
F067196Metagenome126N
F082525Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0098048_10047064F064114GGGGGMSGLNPTYIELARIENLRHQLIAQPTQAIVGRNYGAKVDLMAIAFDTIKTRDAWTIKDLARKMRVKDDVAQELLRNLVKEGHLESRPLHGEAVYEWPDRNPSKPLPRLGSRYR*
Ga0098048_10047066F067196AGGAMPKFNNIEEKQKFFHKAMRKLDTGLPKEASPDLIKFFVLHVITAYDHDDCWDDVKGFVDFALKEKSQFDSARQAVEDADNLLDTITNRKDK*
Ga0098048_10047067F033251N/AMSRLGFGRLARTVLVLVRLKPIERMNVMADKKKRNLTPKKRAMLRWTGKEIDQLLEYKATGFKHSEIGELMGRSTKAINVKMSKIRLGVEAASNPVEDLTPFQKNLDSTLFGDVSPDDKPKKPRKPRATKLSLTPQPLVTDTFNVPKKPVYAAVVLVLVIVAWYLGSMS*
Ga0098048_10047068F082525AGGAMEFKIKTGVPIPDISLGKKRGRGKWQVLLSSMSDGDCVDVPLRSYNSIYVAASRLGITLMSRREGEGLADGFVRIWRVSDDD*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.