Scaffold Ga0098048_1026672

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098048_1026672

Scaffold Ga0098048_1026672

Overview

Basic Information
Taxon OID	3300006752 Open in IMG/M
Scaffold ID	Ga0098048_1026672 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1901
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)		Depth (m)	48
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020602	Metagenome / Metatranscriptome	223	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_10266722	F020602	AGGA	MGIKYISGFRGLDHAKQHLLRSTHLGSACTSGYTVLNPSEAFDQQACFVYLNGAMLREGTSGNGGDYVLSGTNTITFNTAVDY*

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