NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098048_1126233

Scaffold Ga0098048_1126233


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1126233 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)767
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008590Metagenome331Y
F054844Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0098048_11262331F054844N/AVIKTGTLVAFRGSVGLVTGACKKRWAKPADVWVMWADEPKPRIECGLRLEVLNASG*
Ga0098048_11262332F008590GGAGGMQVGDLVTYWYQRPRWHKGQSVHVGLIIETGKFTGNRDVKVLWTDKSEPETECSQHLSLVDDSLTT*

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