NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098039_1029651

Scaffold Ga0098039_1029651


Overview

Basic Information
Taxon OID3300006753 Open in IMG/M
Scaffold IDGa0098039_1029651 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1944
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)210
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036930Metagenome169Y
F038274Metagenome166Y
F070566Metagenome / Metatranscriptome123N
F086173Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0098039_10296511F036930AGGAGMTQYTHLVEETKRQQAFREWKNKVLYIHLNNGKIETKYQDGRIEIEDTSTGQKTYEFPKGYEGEAYRESLFNKFLRVFTA*
Ga0098039_10296514F086173AGGAGMLYKDKFPCDPLLHFDSKDAGTIEWTWRTKPAEAIYWKTYKPKKRDIKILSRVTPEQRKKVTTELLQSIIQTEHPPTVKQPKVRTL*
Ga0098039_10296515F038274AGGAGMASEYRLDKHNGEYVLVSSDSSKPTIRLGTDDLEIAKARAKPHMKFI*
Ga0098039_10296516F070566GGAGMPKLEFTEAYWNQATSIFEGVQVLESKEVGRTIKYYAFPSKEGVPIIVLHDDEEKILKDRKLHKRVIGEIINKVTEEL*
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