NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098044_1000231

Scaffold Ga0098044_1000231


Overview

Basic Information
Taxon OID3300006754 Open in IMG/M
Scaffold IDGa0098044_1000231 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29468
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (19.44%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)78
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007550Metagenome / Metatranscriptome349Y
F013467Metagenome271Y
F015147Metagenome / Metatranscriptome257Y
F021787Metagenome217N
F025853Metagenome / Metatranscriptome200Y
F089035Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0098044_100023113F013467GGAGGMTFGDLRNWVWCEDCLEWKDADEVSFAGIEEDSYGKDVLTFNCDKCGNENKNNIVSSPTKPRG*
Ga0098044_100023142F025853N/AMKKFLVNYIPAVHEGQENKEDKSYSYRVEMDEQFANRSEKDESAGMAAKDSESGLWKRFRWDRIQSAVAI*
Ga0098044_100023146F021787N/ALTTPVFCVMLFPVMRDMISCEEVFEADPQARAEFDVVCDEWLNEAIDAQDAEEDLVECEGCGEQWYAHQAGANGRIEWCRKCYKNDPYYV*
Ga0098044_100023149F015147N/AMIEKIKWLVSDLGLNEFNAWLWIVGGAALTAAVLVLLSGGFDEVFRYWRVFFLNL*
Ga0098044_100023155F007550N/AMIMKKIILFLFLFSVSLNAASLKIVPVQQKTLPNGNAYGLESGIYFELTDLHPFIMYKLQYSEDLKTWKDLVWLGTHKIAMTSPYFTWNQLPPNQCFFRIEEAW*
Ga0098044_100023160F089035N/AMTSKMIRKPKPDALKRLEAAQAQARKQKRMIKEALETIRLNKPYKRSEDAPTLKEWNDSWIG*
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