Scaffold Ga0098054_1026800

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0098054_1026800

Scaffold Ga0098054_1026800

Overview

Basic Information
Taxon OID	3300006789 Open in IMG/M
Scaffold ID	Ga0098054_1026800 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2270
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	45
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029745	Metagenome	187	Y
F040056	Metagenome / Metatranscriptome	162	Y
F048570	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10268002	F029745	AGGA	MASKAPRVGDVVKSRVTTESVAGFIVGKEGIHVWVRFFDTALEGDSWDVFTRRDTLEVLSRANAS*
Ga0098054_10268003	F040056	GGAGG	VQTQADFRIGTLLRWNAGNTGELSDIDELGIVIQMPGETAYYYIAWSTTNTVSHHTPDMVEESLYQCQMEIVG*
Ga0098054_10268007	F048570	GGAGG	VKIGDLVRCLPRNEWENYDEWLGLIIGEPPLAKTVQWVCSDGRGDVQEVNHSPEELEVISESR*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.