NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098054_1146494

Scaffold Ga0098054_1146494


Overview

Basic Information
Taxon OID3300006789 Open in IMG/M
Scaffold IDGa0098054_1146494 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)873
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008779Metagenome328Y
F019028Metagenome232Y
F025154Metagenome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0098054_11464942F008779N/AMKDGIYKSNDAIYFVLNEKVLMKILGSMYKTTKHFNFGEYQEPLKPQMIESFDEVYNKVKQW*
Ga0098054_11464943F025154N/AMSPWEIVKQIAGHIYTDEQIDEMTWAECEEIINQVK*
Ga0098054_11464944F019028N/AMKKFNVRDRVFLDEAINAFLRESKKFEEESELLGKRPIITYEYWKQMAEEVMYKLEFHSTQKANRQSRIYNETIDNDE*
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