NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0098074_1001548

Scaffold Ga0098074_1001548


Overview

Basic Information
Taxon OID3300006790 Open in IMG/M
Scaffold IDGa0098074_1001548 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11538
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (68.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameAtlantic Ocean: Gulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)18
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071182Metagenome122N
F088808Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0098074_100154817F088808AGGAGVQIVKNELTNKLNKLNLANDAEVTLRYENGRQVFHYTGDYLDEVLQDTNVISEVAHLVSYDGIRKYNSVINDLRINGALDDYERGSFTFEDHVYEAVKNDWYDYIEESVEQWDHKRGMCNLSAEVKVPLNLLAEAEEFGFTLDNAWKVFVRTDAGVLEVER*
Ga0098074_100154824F071182AGGAGMERTAIGNLFLEAAKRRLEAQIKDAEAKVNLYLTQSVGVGEHPEITEELIKAAEQGAHAQDVLDFINKRWH*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.