NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098074_1009510

Scaffold Ga0098074_1009510


Overview

Basic Information
Taxon OID3300006790 Open in IMG/M
Scaffold IDGa0098074_1009510 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3260
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameAtlantic Ocean: Gulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F007026Metagenome359Y
F019817Metagenome227Y
F029405Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0098074_10095101F001807GAGGMTVLAIENTYFEGNNVVITAVVDEMRLLYRATRLDPEEWAPALCQATIELDPEEPIPLDEDNFCSYLDQLDPHWQLVDTSD
Ga0098074_100951011F029405N/AMRDPNFIDEQRNADLLDAMADFAYEQEQAMRESEAVEWDGIEEISSAERNACDHYNERYVINV*
Ga0098074_10095104F001120N/AMTQDKSPINFDKTIAGFNVTERGIKSYSKSFSLGPFRLTLNARGSGVRGSISIPGTGLSKRNIKLI*
Ga0098074_10095106F001165N/AMQRLEAMQLVARMKESAEKHGIGFIGGFVAPNGEKFVMTNLDDDDAKALMPEDLK*
Ga0098074_10095107F007026N/AMEQTKKYPELTWTKNEYHQLRLALDALEAIRNRESKRHQMDEHLDPHTADVLDEVIGMLSDELDYDPTPSEPGEPPITMDEMHTAAWKEHQAMHS*
Ga0098074_10095109F019817N/AMPATALPALTINQRNLYTYFLNHKKKYGNTPCFVPKLPAQSSRLDQYLQALIKLEQYGLIRVDRSSDNYTGWIMLEPKLSICT*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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