NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098074_1022344

Scaffold Ga0098074_1022344


Overview

Basic Information
Taxon OID3300006790 Open in IMG/M
Scaffold IDGa0098074_1022344 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1902
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameAtlantic Ocean: Gulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009856Metagenome / Metatranscriptome312Y
F042877Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0098074_10223442F042877GGAMTTGLFAAIAVLSFAQLGVEYFQENQVRVFGLVILLLSCLGILA*
Ga0098074_10223444F009856AGGMRFWIDGDDAQRYGLPAAAVLAHLKYWIERNTHAGEDPCMTQSMKQRGEYLPFLTVPQIKGALKKLEEAGAIYRQANGFDRTRTYCLGTDSSLRRDETVSSKGPNHPIEGTELSHVLIETNTSKRTDSAREWERPTEEEVIEYLRDIGAGDLAPTLGPSFFNFYEANGWMAGSTPISKWKPKARQWVSTERNRQSNARQKGFNPEGFTPDGLRDFIDNG*
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