Scaffold Ga0075530_1031424

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075530_1031424

Scaffold Ga0075530_1031424

Overview

Basic Information
Taxon OID	3300006792 Open in IMG/M
Scaffold ID	Ga0075530_1031424 Open in IMG/M
Source Dataset Name	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1948
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	USA: Barrow Environmental Observatory site, Alaska
Coordinates	Lat. (^o)	71.299	Long. (^o)	-156.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000573	Metagenome / Metatranscriptome	1016	Y
F030070	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075530_10314241	F000573	GGAGG	VLAWLRRIIVSIGVGGVSYALMLGIMVLSVVYDHEFEPVITFAFDTGRRILDALDGLVSGSYWGQVAVNHLRERVNMTHVMLSLPAIIISAIVVGIPLNWFLGGTRTALQRIAIAIISVPATVALAVALFTFNALVPETYAALLRFADWVWQGSLNALSASGDTIPGARKLTNVARQGFSGHHFVIMALCS
Ga0075530_10314242	F030070	AGGAGG	LRLYVGERFPAIQCKLVYLGYDLEVTRAPSGWRVGIYPRTADLPILRRSEVFASDQDEAVVVAKGRVDGASLL*

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