NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066658_10000014

Scaffold Ga0066658_10000014


Overview

Basic Information
Taxon OID3300006794 Open in IMG/M
Scaffold IDGa0066658_10000014 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56174
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (60.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001912Metagenome / Metatranscriptome618Y
F006382Metagenome / Metatranscriptome374Y
F050273Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0066658_1000001438F050273GAGMSYNLLPDQEFALLQLLLYIFSFVTLIMIFLYIAAERPGEGKKKVEEEEE*
Ga0066658_1000001451F006382N/ALSRPQTRLVDELFALDSRIRYVALLDRNSKLLESRMRSNVMSLTPETYDRKFMGSVPPMILDTLSQLENQCGPLAHISIQYQKVDLIIFPHNNQIVAISLEPGPLEPILRKLRDSLNLHIHI*
Ga0066658_1000001458F001912AGGCGGMSLSQWDEGSDSDHVTGLKRDIWLVGYCKILAWRGAKLPRYGREGAVEVRPFPAKKRLCVSMAQGLSGEAMKGNPTTTVIPGVDESKPSP*
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