NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066658_10000017

Scaffold Ga0066658_10000017


Overview

Basic Information
Taxon OID3300006794 Open in IMG/M
Scaffold IDGa0066658_10000017 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55007
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (65.31%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015476Metagenome / Metatranscriptome254Y
F090727Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0066658_1000001726F015476N/AMDVLRNLFGNLSAGIIRLLVTVGILAAAYFFIVKPTLETTEKVSHEVNVNVQKGFQQSDLSEINKTIDDVNRRVQREVKKSLRQSQQQGNADKLINCIQRAHQNVTKIQRCSDRFQ*
Ga0066658_1000001730F090727N/AMAYPLALANLEAAVLDACAGEDEWPAQIAAGIYAGVDYAIANPEVVETLASEDAPGSDVLRRYERVIGRLAGFLRVKAPADERLPGATDEALVAGVVGLVGDHLRIGRLDRLAELRPELVLLTLLPYLGFAEAKRWADAAAE*
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