NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066658_10000018

Scaffold Ga0066658_10000018


Overview

Basic Information
Taxon OID3300006794 Open in IMG/M
Scaffold IDGa0066658_10000018 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53946
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (81.03%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001047Metagenome / Metatranscriptome793Y
F013075Metagenome274Y
F016652Metagenome / Metatranscriptome245Y
F037660Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0066658_1000001812F037660GGALTEESAAKRRTYPRATAIVGGLIAGVVAGLIAYLIVGIVGFIIAFIIGAVTGSRATLLANRAREQPS*
Ga0066658_100000182F001047GGAMRETIFDESYNVREVLDDVIERVALREKLLGTAKQFAEKKREDKFTLAIKQFENLMIDFLRLYQPILDRLRSYREGMQKEITALRSSLATVNGMLEVSRGFEGLAPRIQQLEANGQELDANINEKMKMANKIDDLFNRIRPFQAGGAGLMGRDSLSDVLAGMPKDLFPETSEPANEKTRKTGARN*
Ga0066658_1000001832F016652AGGAGMVLIGAVFVLLGIAAESLYISNEKVAYNGAAISANAYMISGLFLIILGLILTLSGARIPKIRIPHV*
Ga0066658_100000187F013075GGAGLPSEFLPRAHSKRLGELDASNWKDLETGRNTSRIDPAIRGIVSSLNRKGYRTFSSCSGGHWANLRRRYDRHESGYVAFSPPSRIPFVLYLALREENQDFMFEAEAVIHDGNGDRRETIYTQLDWQLLDQRKPKLRYYENLFSEIRDAIDSLPRRQDGHKEVLTGLLGKPHLPLGSEIVSCQMKRFSR*
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