Scaffold Ga0066658

Basic Information
Taxon OID	3300006794 Open in IMG/M
Scaffold ID	Ga0066658_10001125 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006794 Open in IMG/M

Scaffold ID

Ga0066658_10001125 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9518
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9518

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (54.55%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010022	Metagenome	309	Y
F014723	Metagenome	260	N
F023077	Metagenome	211	N
F041118	Metagenome	160	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0066658_1000112510	F014723	GGA	MFAAICVALELLFFYNALNTGVVDKTVSIPIGSWSLPISIALFLSLGNALFMVTLWMNVFESTAYVKAGPDKQVRRILYPLRMIRTAALVLAPFTIILFAPYIVEANWFVNSVVSIQAFKQTTESFYNWAFNVSQIDGATRFIISQMLATLGALFIAGLQLWRVKGTKNLVRAFQRRK*
Ga0066658_1000112511	F010022	N/A	GFESRPESANIRLVIDRGVVRASIYQLVFLNSKLILKRLSSMMVTVIPAFVLALLGLEVLWIVGALMGGITGFSLQEFLTQRMRNRMRSEMQLTSVGKSDIDISYDDLLEVRLVKSRLYLITETSSLSASFPRGYSRKIQPMLVNIFESKFTTEESVRAAEAAEKENEKGEHPRGDRGKLSCR*
Ga0066658_100011257	F041118	GAGG	MTRLSFELVDPNSGEGASAEAVVDEKLIEDLNSYRSQGSRGKAFLIWIDTLKGEVSWQLRKIPDPFE*
Ga0066658_100011259	F023077	N/A	MTTTIALLVFPVHSATMNPEENVNLYTGNRLMIDSNQPSIKSVVVRGNLTGATLSNNAYPAKNFTLTTNSTQLYTVDLLLSYQAPYTTEIVISDPSSGSKTQYTSYFVSGGDLNLTVFASFQAAPSTGPSTPLGWSSFYGWVSQFGGAFPFWIKILYAVLGAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKVYLWTEVVFRTLIAGFAISLAVMIGEVLVLLIAQYLLFVNLNLISLVDFFSIFFVAALGTLVYLTREGLERIFDLKPIMED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066658_10001125

Overview

Ecosystem & Geography

Associated Families

Sequences