NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066658_10015630

Scaffold Ga0066658_10015630


Overview

Basic Information
Taxon OID3300006794 Open in IMG/M
Scaffold IDGa0066658_10015630 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2882
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081165Metagenome114N
F085527Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0066658_100156301F085527N/AMMVLIVILLSAIVYVWVVPAFTSQASKDNAGAAYAEKFETVRAQFANNAVSSPETVAPCGSQDTSVGCAPSSYLTCGGSITSTYTGNVLVPVNGVCLITATATVNGNVYVYSGGNLTVIGGTINGGLEANSALSVTLQNAKVSGFTGLYNVQTVNISGSALNTSGQSICTDACGGALYAGGRGYFSMTNTNVTGQVENEVGHNTIVNNNHVSGRLEIESADLGQIINNVVGSLDLDANGTIVIAGNTVTGATGCPAPPIAGKSVCYGSNAWCGTGNNQIPTGQTNGSCIGNVEVDVRNTGSTPVTFVAVYMTNIPLAATLSWHLASGNPTQCGNVQLATCIQLPIIIPVGDMAEITMGWTAPSGAFPLPWNYIYFIFVSSHQNYVDGYLYFQQGLGMPLQSRLEQRICPPCY*
Ga0066658_100156303F081165AGGMIFMAWAFYVETTGRGALFVEPNRVLAAGELATVATGMMALLVLFFRGLSQKEQAPTESLQE*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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