NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066665_10072640

Scaffold Ga0066665_10072640


Overview

Basic Information
Taxon OID3300006796 Open in IMG/M
Scaffold IDGa0066665_10072640 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2447
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016387Metagenome / Metatranscriptome247N
F049864Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0066665_100726401F049864GGAMAKFILSVGDGTFEILASEARRRDVTVQQLLRAVIVPEWVRENAEVNPPSMAPREIAPHLMRQSIYPSQRDQMLQTPVNR
Ga0066665_100726406F016387N/AAYSGQSYAVHTGKMIADCKRRETYRLSACNDPRGFRGQKMTLAPTRTMLELKSTPVSSSRSVTRTLRLDEDVEAGIVEMAEREQFSFNLLANRALRKLVEWEDKAGKFGFIQVPTSLVEKVFSILSDEEARELGREAGANTLPEMVLFWFKKFNMENALKAMEMIGSYGNAFRLQYTLDGETDTVVLKHDRGPRVSAFYGEMFQSLFKPMGAKVETRETDGQVVATIIRPLTGLASEHKDALLIPSFAGAKNGRGYKR*
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