NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066665_10358328

Scaffold Ga0066665_10358328


Overview

Basic Information
Taxon OID3300006796 Open in IMG/M
Scaffold IDGa0066665_10358328 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1192
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000528Metagenome / Metatranscriptome1047Y
F050281Metagenome145Y
F091706Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0066665_103583281F091706AGGAMKADSFGEIFLWNREMDRLIRVLQRMESSGILSKHEMKVYEVQLEEVRAGLNADLAGRMATSERADQSRLKRQRTAWERKAPDSKQKDLPH*
Ga0066665_103583282F000528GAGMGEWKAQISLRVRQALRAELEEFAVRERRKLGNITELILEWAVEQLKTAGSTERLLKYKIRLPDTAATGRKLHK*
Ga0066665_103583283F050281GGAMIYPRQFSLGQNKRIASATDALGRLRANSVDAVAVIALYEACDRELQEVAVRYFGKNQLGKKAVLNLLVAVVSRAWSYDPQSISASEWVSRVADAEARRLWEALDAGGSGDQLTRRAM*
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