NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066659_10000134

Scaffold Ga0066659_10000134


Overview

Basic Information
Taxon OID3300006797 Open in IMG/M
Scaffold IDGa0066659_10000134 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21506
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (76.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034123Metagenome175N
F035684Metagenome171N
F090164Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0066659_1000013415F090164GGAGVPVSLGTNFGSGEVLMGRYGCFNCSSNTGDFAFLVIALGVAAFGVYAVKQRWQYSRPEEDHQDDEQVIVDQGGWETKSFDSKESSTKASGDDEGWETKPEG*
Ga0066659_1000013426F034123GAGMKGMKGLFDLGGKSVLRLGLLVLSTLLIVGGSVFFYDRLVYERALSVGGVITGSGSTTQTGLNPAPGTILLLAVSAVLISLSGFGFLREVFRGKRSRKALAKESSPTASVSLPLEIGPPLQVPSMQRDWEESPKKEESKH*
Ga0066659_1000013427F035684AGGMGLLPEFFTLLGIEIFAALSLVSVLLDRDIPSSAQWLFQGAAGLGLGQLVVTEGFGTSSVIDASRFWISIFYLILSVCSVAGLNVYLVSVRRKAAIASVFSGTITTPTVTVSVLSISSYLGGVDVSFTPLTIVILVVPAVLVGVGAYGFLHKTFKRIGKSAGRELSPASVSAPVETPRKYESLDLKDILGEWRSPRRRIEWHRR*
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