NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066659_10000829

Scaffold Ga0066659_10000829


Overview

Basic Information
Taxon OID3300006797 Open in IMG/M
Scaffold IDGa0066659_10000829 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12475
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027789Metagenome / Metatranscriptome193Y
F054741Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0066659_1000082913F054741GAGLDFTGSTEREQLRIEMCLEEHPYRKKFLATIIGPVSIDDPYFEGTYLLKIEPGAAEKLSVDHILFHPEFYDFHRTFLKRRDVVRESKELGKPSLDTFLLNPILANDGLGGRVYATHRRDLIQARAFRKNEFSVLAYGIITRLKSHSMTHS*
Ga0066659_100008292F027789AGGVHGSVARGEPGPFSDIDMLGVTNRKKKPADFSYFDGDIYVGVGFLSVAELEKEFTDPRAFFWARGNAETTKILYDPKGVLWRIMLRWKKAKPSHQILEKSLWDEYHNIIEYSGKLRNGWLKRNDFLTRYSARVIAEHVERAIIVLNDLSIISENYLWRQILNARKRPMHLRTDYPLALGIRGTEEVAKVYRSALRLCKETLRLIRNEFGEKAKHMRFRALLTESLNKHGL*
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