NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066659_10001704

Scaffold Ga0066659_10001704


Overview

Basic Information
Taxon OID3300006797 Open in IMG/M
Scaffold IDGa0066659_10001704 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9795
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009950Metagenome310Y
F040544Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0066659_100017045F009950GAGGMKITMKADGKRLRPWKIADTVFHAEETIRAEHLELVRKAHLVPEPERKKLNGRDVFEPGQVFFMAISTEKDEAKVPYVHWRSVVDCGEHYRFLNPDGTLGERVTSAIVVRRAF*
Ga0066659_100017046F040544GGCGGLNQTKPEHAKTFAAEGTVYWLLVSAILLVYLTFAVAAAAGTLYFAFTLVLGIVEAALAYACWTLKKWGFLASTLTAIAVSGLAFGILYSPIGDLLLLFQLQIIFFAYRAHREPKQLSAQ*
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Institute for Fundamental Biomedical Research
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