Scaffold Ga0066659

Basic Information
Taxon OID	3300006797 Open in IMG/M
Scaffold ID	Ga0066659_10009339 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006797 Open in IMG/M

Scaffold ID

Ga0066659_10009339 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5164
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5164

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019304	Metagenome / Metatranscriptome	230	Y
F031422	Metagenome	182	Y
F034866	Metagenome / Metatranscriptome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066659_100093392	F019304	GGAG	MGDRMDMDQLRQEQLVKRTRLLVWAESLVILGLLIWVSLEYENNLFLQSWAKSNVGPIGFLLNGTLAGLYAGALLGYSVAKYAGRRSEEEKILELLKKKSLN*
Ga0066659_100093393	F034866	GAG	MQSQQQSKGEVIAELRGKTDSFSIKDISSSGVKMENNDVGQITGKYQGNFMETVSIHMKTDGTSEWEGKGIQMVGKDMVVVTGHGKGHRGPDGNVMFEGEQKYMTQSPNLSWLNTTKAWIEGAANLADQTFTAKVYARK*
Ga0066659_100093398	F031422	N/A	VLSIQVSPFYLQIDATGIPATIPLASILGALTRVLLILCSGALLASSFRPTAWWRPLAAWLSLASLTELFFSLFLLVHAGQAALVAAYGANPPTSGTVSYPGRILGTDLNTYLNPSLTASLNLDFYLGLLSLTVIGASTIIRMLQDRGLLATIAIPGVKEFFLIPPYRHAWLSTADRDLNPLSRDPENTTDDQLLDSFGKIYHTVQPGGIISIILPSWASTLSDRFQKLLTWTGFSIEDTGTIYRAPGKPETQLRFKKPLSPSESGVQGPEPTPVLEQAIESESSFPDIPPQLTVSTQPDWGLTKMTKQERAMLRSALSILSKSREPLPYHELLNQVYMELVERKVEFDSARQIESTLLKHSGQELALTEEADEQGLKSVKRWSLGAEDLAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066659_10009339

Overview

Ecosystem & Geography

Associated Families

Sequences