NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066660_10174661

Scaffold Ga0066660_10174661


Overview

Basic Information
Taxon OID3300006800 Open in IMG/M
Scaffold IDGa0066660_10174661 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1615
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001727Metagenome / Metatranscriptome645Y
F006427Metagenome / Metatranscriptome373Y

Sequences

Protein IDFamilyRBSSequence
Ga0066660_101746611F006427GAGGMRMKFKDRRGFETKGKDLLDFARSYLSEAFPNPDHQGCPPDAALRSLAFNPTEGEPAVTEHLAACSPCFRRYGELLTELKAQREQEKRFSLDRIPVWTKAHPVLAGAAALCLLLIAIGVGFLLRGIRQPNTAPIDAHRKPNPTEPSNPAVAYLPFGLDLRTLSPIRGSESPATGTRRRVLVPSSPLHLTLTLPLASPEGRYELKLTAQDQTFWSKPARAHLQKGKTLIEVDADFAQIR
Ga0066660_101746612F001727AGGAMDGGARPPNRSFRVSPVDRLGRPISPLVLGAAEEIGRRAIEHAEKLIIDPAVAAGLLEEAAATVSRALASKKLCTQAGVQDLPSYLFRAFIHRVDRIKKKQLTQVDDVPIPTLGSGNSTDPQADVEMKILVDELLTRCDPVTRDMFYRRVQGFSWKEIGRSYGISKDSAKVRFSQALRRIGEKLGLKSDL*
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