NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079223_10362309

Scaffold Ga0079223_10362309


Overview

Basic Information
Taxon OID3300006801 Open in IMG/M
Scaffold IDGa0079223_10362309 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)898
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWF1_45_5(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.7655Long. (o)-111.8143Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045186Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0079223_103623091F045186N/AMSGGKPFMDNGKGMCSYKDNPLKPARRVEPMCGPGGNADQIKANKLLKQAQTKADSLRGKSGM*
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